CRAY

Information about CRAY

Published on September 11, 2007

Author: Clown

Source: authorstream.com

Content

Slide1:  GRID FORUM KOREA Rev. 1 Introduction to CrayBioGrid July 12, 2002 Dick Russell, Cray Inc. Slide2:  Cray Inc. Introduction to Cray Cray Inc. (Nasdaq NM: CRAY) Est.: April 1, 2000 (Tera Computer + Cray Research) HQ: Seattle WA, USA Products: Supercomputers (Vector, Micro Processor, Multithread) Market: Government, Industry, Academic Research Recognition: Current World Record for Computer Speed 1972: Est. by Seymour Cray in Minnesota, USA 1976: First Cray-1 shipment to Los Alamos 1980s: Ship follow-on products Cray XMP, Cray YMP, Cray-2 1990s: More follow-on products Cray C90, Cray J90,Cray T3D Cray T90, Cray T3E, Cray SV1 1996: Merged with Silicon Graphics(SGI) 1987: Est. by Burton Smith in Washington, USA 1988: Software development starts 1991: Hardware development starts 1997: First MTA-1shipment to SDSC (San Diego Supercomputer Center) 2000: Purchased Cray business unit from SGI Slide3:  Development Plan Cray Product Roadmap First sustained teraflop (TF) on a real-world problem: 1998 Targeted Solutions First sustained petaflop (PF) on a real-world problem Cray XX3 Cray SV2e (2005) Cray SV2 (2h2002) Cray T3E-1350 Shared Technologies Cray Services Cray Consulting Slide4:  Our Innovations 1976 1982 1985 1988 1993 1995 2001 2002 Slide5:  Status Update Introduction to CrayBioGrid CrayBioGrid consists of: National University of Singapore, Cray SV1 Monash University, Australia, Cray SV1 Cray Japan, Cray SV1 Other potential members: SANBI, South Africa, Cray SV1 Arctic Region Supercomputing Center (ARSC), Cray SV1 Institute for Systems Biology, via ARSC TACC/AIST, Japan, via APGRID Other Cray customers in Europe and Japan CrayBioGrid/APBioGrid/APBioNet rides on APAN advanced network:  CrayBioGrid/APBioGrid/APBioNet rides on APAN advanced network Current sites Slide7:  Purpose Introduction to CrayBioGrid Idea for CrayBioGrid came from APBioGrid of APBioNet Phase 1, provides an applications testbed for: Comparative genomics e.g. Cray/IMCB fugu fish/human genome project Automated workflows combining access to data, access to computation, and access to The Grid e.g. APBioNet project with Lion BioSciences, Cray, and KOOPrime Phase 2, may allow experiments with: New dynamic programming solutions for proteonomics International projects cooperating in building encyclopedias of genes Slide8:  Current collaborations Introduction to CrayBioGrid APBioGrid, Singapore: higher productivity for biologists using automated workflows Tying together instruments, data, and computation IMCB, Singapore: exploring an alternative to BLAST for comparative genomics Success measured by speed of Cray SV1 while maintaining the same or better sensitivity as BLAST SANBI, South Africa: higher quality EST clustering Applying D2-cluster software to whole datasets instead of data samples Slide9:  Current collaborations, continued Introduction to CrayBioGrid Plant BioTechnology Center, Australia: confidential Konrad Zuse Institute Berlin (ZIB) and Bielefeld University, Germany: target better methods For EST Clustering, Protein Database Searches and 3D Protein Structure Prediction ICM Warsaw: bioinformatics software development ARSC/Institute for Systems Biology, Seattle: confidential SDSC, San Diego: NPACI ROCKS for PC Clusters Slide10:  Cray’s approach to Life Sciences Working with key collaborators, implement new methods with highest possible performance (100 times or more faster), without compromising fidelity Support existing software like BLAST, Smith Waterman, EMBOSS, etc. Enable exhaustive, sensitive searches of complete databases Exhaustive, sensitive comparisons between databases Highest possible confidence in results Special SV1ex Hardware Features:  Special SV1ex Hardware Features 2-pipe vector CPUs 64 word ( 4096 bit ) registers ideally suited for sequence data High capacity, high speed solid state disk ( SSD ) I/O device of DRAM, no rotating media Up to 224 Gbytes, 80 Gbytes/sec ( 270 different human genomes, 100 human genomes/sec ) Special functional units for sequence analysis 6 fully independent functional units, each with 2 pipes, allow 12 64 bit results/clock period Extremely high speed packing, string manipulation, comparison, counting andamp; integer operations implemented in hardware Exciting new systems from Cray:  Exciting new systems from Cray Cray MTA-2 Many special features for integer and bit manipulation, as in SV1ex plus huge shared memory (up to 1TB) Cray SV2, Scalable vector MPP system, year-end 2002 Has SV1ex special features Cray Red Storm High peak performance Intel-compatible system with proprietary very high speed interconnect, 2004 Cray Dell PC Clusters Industry leading price/performance Slide13:  SV1ex , Scalable Vector Solutions Significant Resource for the entire Biological research community. Slide14:  MTA-2 , Multi-threaded Architecture 128 Virtual Processors in a CPU module Zero Overhead Thread Switching Up to 1TB Scalable Shared memory The Promise of Parallelism Realized Slide15:  12.8 GFLOPS per CPU 51.2 GFLOPS per Module 819 GFLOPS per Cabinet SV2 , the Next Generation Supercomputer Extremely Scalable Vector Processors on MPP Slide16:  SV2 , the Next Generation Supercomputer 3.2 TFLOPS in 4 Cabinets 52 TFLOPS in 64 Cabinets Slide17:  Basic Configuration Cray HPC Cluster Package CAE_package_Flyer_1c.pub Console GbE Switch 100BASE-T Switch Compute Nodes Management Node Gigabit Network Gigabit Network Compute Network Management Network (1000/100/10 Auto Detection) Slide18:  999mm Basic MUS Cray HPC Cluster Package CAE_package_Flyer_1c.pub 2,000mm 602mm How do I join CrayBioGrid?:  How do I join CrayBioGrid? Send email to: cray.bic.nus.edu.sg or to: [email protected] Future plans:  Future plans CrayXXXGrid E.g. CrayCAEGrid, CrayDataMiningGrid Collaborations with experts in these fields Globus-enabled product line from Cray Make Cray’s unique technology more accessible to users via workflow techniques and the ability to send appropriate work for Cray systems over The Grid

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