mne tools scripts kskassam

Information about mne tools scripts kskassam

Published on June 26, 2007

Author: BAWare

Source: authorstream.com

Content

MNE Tools & Scripts:  MNE Tools andamp; Scripts Karim Kassam Slide2:  meg_average mne_simu meg_stc_morph ROI analysis in Excel custom MNE movies Slide3:  Slide4:  Real Data Simulated Data Slide5:  Subject 1 Subject 2 Subject 3 Slide6:  meg_average:  meg_average VBA in Excel:  VBA in Excel Slide9:  Real Data Simulated Data mne_simu:  mne_simu Simulate a source mne_simu:  mne_simu mne_simu:  mne_simu + mne_simu:  mne_simu mne_simu:  mne_simu Slide15:  Subject 1 Subject 2 Subject 3 meg_stc_morph:  how bad is it? spatial problems statistical problems meg_stc_morph now infamous intersubject averager there are some problems it’s not that bad, at least qualitatively Slide17:  Real Data Simulated Data Spatial problems:  Spatial problems mne_make_uniform_stc Spatial Problems:  Spatial Problems Spatial Problems:  Spatial Problems Spatial Problems:  Spatial Problems Spatial Problems:  Spatial Problems Spatial Problems:  Spatial Problems Spatial Problems:  Spatial Problems ROI analysis:  ROI analysis avoid spatial problems ROI analysis:  ROI analysis avoid spatial problems ROI analysis:  ROI analysis avoid statistical problems ttest ROI analysis:  ROI analysis avoid statistical problems Arithmetic Average subtract condition in xplotter (task - control) noise normalize convert f-statistics to p-stats ROI analysis:  ROI analysis avoid statistical problems T Test calculate currents for main effects (task and control) generate ROI, perform ttest (ttest averaged over 50 ms) ROI analysis:  ROI analysis avoid statistical problems Arithmetic Average T Test Slide31:  Subject 1 Subject 2 Subject 3 MNE Movies:  MNE Movies EasyMEG does a great job of rendering movies But sometimes for talks we may want to show more Can use a combination of programs to make custom movies MNE Movies:  MNE Movies meg_snapshot_om  make pictures for every frame and every view photoshop adjust contrast and put frames together matlab (showtime toolbox) control timing and make movie MNE Movies:  MNE Movies meg_snapshot_om  make pictures for viewname in 'lat med ven' do meg_snapshot_om \ --frameopt '0 10 10 20 20 30 30 40 40 50 50 60 60 70 ...' done MNE Movies:  MNE Movies photoshop  adjust contrast MNE Movies:  MNE Movies photoshop  create frame MNE Movies:  MNE Movies matlab  create movie MNE Movies:  MNE Movies matlab  create movie where to go for more info:  where to go for more info Visual Basic in Excel http://www.engineering.usu.edu/cee/faculty/gurro/VBAandamp;Excel.htm mne_simu (type in command line for instructions) mne_make_uniform_stc (type in command line for instructions) where to go for more info:  where to go for more info Movies: meg_snapshot_om (will post) AppleScript for Photoshop (will post) showtime.mex for Matlab (quicktime movie maker) www.psychtoolbox.org/download thank you:  thank you Moshe Bar Elissa Aminoff Jasmine Boshyan Mark Fenske Avniel Ghuman Nurit Gronau Irina Ostrovskaya Matti Hamalainen Ksenija Marinkovic Eric Halgren Brendan Cox Matt Cain Thomas Witzel Sari Levanen Seppo Ahlfors Steve Stufflebeam Daniel Goldenholz Dan Wehner

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